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Situs coarse grained modeling
VMD molecular graphics
EMotion normal mode archive
Biomachina
ModeHunter is a Python-based program package for the normal mode analysis of coarse grained elastic networks.  The package includes the classic elastic network algorithm, the new bend-twist-stretch algorithm for arbitrary coarse networks, and various useful tools for analysis and animation of modes.
Coarse Grained Normal Mode Analysis of the Ribosome
The software is copyrighted, (c) 2009-11 under the terms of the legal statements in the distribution . Please send any inquiries, bug reports, etc. to modehunter >>at<< biomachina.org.

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