• Download and Installation
• Script and Solutions

Follow first the simple registration and download steps (you need to download the tutorial separately)!

In addition to the Python programs, the ModeHunter_Tutorial_1.3 directory contains also a number of additional data files and a directory:

• 4AKE_chain_a_ca.pdb: adenylate kinase C-alpha atom representation.
• adkin_monomer_30_pseudoatoms.pdb: coarse grained model coordinates.
• adkin_monomer_30_pseudoatoms.psf : coarse grained model connectivities.
• tutorial.script: A documented and shell executable text file that explains the individual tutorial steps.
• solutions: directory with expected output files of the tutorial for comparison.
• tutorial.log: the expected tutorial script output in the command shell
  

Please try out the above mentioned tutorial.script and, especially, read the documentation within this file. You can execute the script by entering: "./tutorial.script" in a terminal window (command shell). (If the executable or the python programs do not run, you may have to adjust /bin/env/python to point to the local python version, or edit the script by adding executables to the beginning of lines where .py files are executed.) You can compare the files on your system with those in the solutions directory and with the expected output in tutorial.log. The overall workflow is documented in the script file and should be self-explanatory from the program output in the command shell.