- Comparing the BTS and ENM Models for Normal Modes:
- Joseph
N. Stember and Willy Wriggers. Bend-Twist-Stretch Model for
Coarse Elastic Network Simulation of
Biomolecular Motion. J. Chem. Phys. 2009, 131:074112. [Abstract]
[Article]
- Decoy Generation with ENM Normal Modes:
- Maytha
Alshammari, Jing He and Willy Wriggers.AlphaFold2
Model Refinement Using Structure Decoys.BCB '23: Proceedings of the
14th ACM International Conference on Bioinformatics, Computational
Biology, and Health Informatics. 2023, 108:1-7. [Abstract]
[Article]
- Flexible
Fitting to Cryo-EM Density Maps:
- Maytha
Alshammari, Jing He and Willy Wriggers. Flexible Fitting of
AlphaFold2-Predicted Models to Cryo-EM Density Maps Using Elastic
Network Models: A Methodical Affirmation . Bioinformatics Advances.
2024, Submitted
-
- ModeHunter Review
Article with Usage Examples:
- Willy Wriggers
et al.. TBD. 2024, In Preparation. (contact us for progress)
In
addition, the
following two earlier papers show applications of ENMs to multiscale
structural data:
- Pablo Chacón,
Florence
Tama and Willy Wriggers. Mega-Dalton Biomolecular Motion
Captured
from Electron Microscopy Reconstructions. J. Mol. Biol.,
2003, Vol. 326, pp. 485-492. [Abstract]
[Article]
- Florence Tama,
Willy Wriggers,
and Charles L. Brooks III. Exploring Global Distortions of
Biological Macromolecules and Assemblies from Low-Resolution Structural
Information and Elastic Network Theory. J. Mol. Biol.,
2002,
Vol. 321, pp. 297-305. [Abstract]
[Article]
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